This work intends to integrate artificial neural network (ANN) and data envelopment analysis (DEA) in a single framework to evaluate the performance of operations in the container terminal. The proposed framework is based on three steps. In the first step, a proposed identify the performance measures objectives and the indicators affecting the system. In the second step, the efficiency scores of the system are computed by using the Charnes Cooper and Rhodes (CCR) model (oriented inputs). In the last step, the Moth Search Algorithm (MSA) is employed as a new method for training the Feedforward Neural Network (FNN) to determine the efficiency scores. To demonstrate the efficacy of the proposed framework, two container terminals of Tangier and Casablanca are adopted to evaluate the performance.